ISREC

Frame -ProfileScan Server

Search a short DNA sequence against a protein profile database
This server uses the frame-search capabilities of pfscan to query the collection of prosite profiles (including pre-release) with a single DNA sequence. The six reading frames of the DNA query are inspected. Coding frameshifts in the DNA sequence are supported. Since frame-tolerant searches consume lots of cpu-time, DNA sequence length is limited to about. 2400 bases (more information on the list of available profiles, on the profile method, and on how to interpret the NScores reported by pfscan). 

Usage: Paste your sequence in one of the supported formats into the sequence field below and press the "Run ProfileScan" button. Make sure that the format button (next to the sequence field) shows the correct format 
Database:   We are currently upgrading both software and hardware used by this page. We apologize in advance for any trouble it may cause.
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Query DNA sequence,    format: 

  

        Comments, suggestions and troubleshooting reports should be sent to M.P.

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